J. M. Freeman, T. N. Plasterer, T. F. Smith, and S. C. Mohr, Patterns of Genome Organization in Bacteria, Science, vol.279, issue.5358, pp.1827-1830, 1998.
DOI : 10.1126/science.279.5358.1827a

A. Beletskii, A. Grigoriev, S. Joyce, and A. S. Bhagwat, Mutations induced by bacteriophage T7 RNA polymerase and their effects on the composition of the T7 genome11Edited by M. Gottesman, Journal of Molecular Biology, vol.300, issue.5, pp.1057-1065, 2000.
DOI : 10.1006/jmbi.2000.3944

M. P. Francino and H. Ochman, Deamination as the Basis of Strand-Asymmetric Evolution in Transcribed Escherichia coli Sequences, Molecular Biology and Evolution, vol.18, issue.6, pp.1147-1150, 2001.
DOI : 10.1093/oxfordjournals.molbev.a003888

P. Green, B. Ewing, W. Miller, P. J. Thomas, and E. D. Green, Transcription-associated mutational asymmetry in mammalian evolution, Nature Genetics, vol.33, issue.4, pp.514-517, 2003.
DOI : 10.1038/ng1103

M. Touchon, S. Nicolay, A. Arneodo, Y. Aubenton-carafa, and C. Thermes, Transcription-coupled TA and GC strand asymmetries in the human genome, FEBS Letters, vol.108, issue.3, pp.579-582, 2003.
DOI : 10.1016/S0014-5793(03)01306-1

URL : https://hal.archives-ouvertes.fr/hal-00344587

M. Touchon, A. Arneodo, Y. Aubenton-carafa, and C. Thermes, Transcription-coupled and splicing-coupled strand asymmetries in eukaryotic genomes, Nucleic Acids Research, vol.32, issue.17, pp.4969-4978, 2004.
DOI : 10.1093/nar/gkh823

J. R. Lobry, Asymmetric substitution patterns in the two DNA strands of bacteria, Molecular Biology and Evolution, vol.13, issue.5, pp.660-665, 1996.
DOI : 10.1093/oxfordjournals.molbev.a025626

URL : https://hal.archives-ouvertes.fr/hal-00435031

E. R. Tillier and R. A. Collins, The Contributions of Replication Orientation, Gene Direction, and Signal Sequences to Base-Composition Asymmetries in Bacterial Genomes, Journal of Molecular Evolution, vol.50, issue.3, pp.249-257, 2000.
DOI : 10.1007/s002399910029

M. Bulmer, Strand symmetry of mutation rates in the??-globin region, Journal of Molecular Evolution, vol.327, issue.4, pp.305-310, 1991.
DOI : 10.1007/BF02102861

M. P. Francino and H. Ochman, Strand Symmetry Around the ??-Globin Origin of Replication in Primates, Molecular Biology and Evolution, vol.17, issue.3, pp.416-422, 2000.
DOI : 10.1093/oxfordjournals.molbev.a026321

A. Gierlik, M. Kowalczuk, P. Mackiewicz, M. R. Dudek, and S. Cebrat, Is there Replication-associated Mutational Pressure in the Saccharomyces cerevisiae Genome?, Journal of Theoretical Biology, vol.202, issue.4, pp.305-314, 2000.
DOI : 10.1006/jtbi.1999.1062

E. M. Ladenburger, C. Keller, R. Knippers, T. Taira, S. M. Iguchi-ariga et al., Identification of a Binding Region for Human Origin Recognition Complex Proteins 1 and 2 That Coincides with an Origin of DNA Replication, Molecular and Cellular Biology, vol.22, issue.4, pp.1036-1048, 1994.
DOI : 10.1128/MCB.22.4.1036-1048.2002

C. Keller, E. M. Ladenburger, M. Kremer, and R. Knippers, The Origin Recognition Complex Marks a Replication Origin in the Human TOP1 Gene Promoter, Journal of Biological Chemistry, vol.277, issue.35, pp.31430-31440, 2002.
DOI : 10.1074/jbc.M202165200

L. Vassilev and E. M. Johnson, An initiation zone of chromosomal DNA replication located upstream of the c-myc gene in proliferating HeLa cells., Molecular and Cellular Biology, vol.10, issue.9, pp.4899-4904, 1990.
DOI : 10.1128/MCB.10.9.4899

T. Nenguke, M. I. Aladjem, J. F. Gusella, N. S. Wexler, and N. Arnheim, Candidate DNA replication initiation regions at human trinucleotide repeat disease loci, Human Molecular Genetics, vol.12, issue.9, pp.1021-1028, 2003.
DOI : 10.1093/hmg/ddg111

F. D. Araujo, J. D. Knox, S. Ramchandani, R. Pelletier, P. Bigey et al., Identification of Initiation Sites for DNA Replication in the Human dnmt1 (DNA-methyltransferase) Locus, Journal of Biological Chemistry, vol.274, issue.14, pp.9335-9341, 1999.
DOI : 10.1074/jbc.274.14.9335

S. Schwartz, Z. Zhang, K. A. Frazer, A. Smit, C. Riemer et al., PipMaker---A Web Server for Aligning Two Genomic DNA Sequences, Genome Research, vol.10, issue.4, pp.577-586, 2000.
DOI : 10.1101/gr.10.4.577

S. Nicolay, E. B. Brodie-of-brodie, M. Touchon, Y. Carafa, C. Thermes et al., From scale invariance to deterministic chaos in DNA sequences: towards a deterministic description of gene organization in the human genome, Physica A: Statistical Mechanics and its Applications, vol.342, issue.1-2, pp.270-280, 2004.
DOI : 10.1016/j.physa.2004.04.088

URL : https://hal.archives-ouvertes.fr/hal-00343459

E. S. Lander, L. M. Linton, B. Birren, C. Nusbaum, M. C. Zody et al., Initial sequencing and analysis of the human genome, Nature, vol.6, issue.6822, pp.860-921, 2001.
DOI : 10.1038/35057062

P. Kapranov, S. E. Cawley, J. Drenkow, S. Bekiranov, R. L. Strausberg et al., Large-Scale Transcriptional Activity in Chromosomes 21 and 22, Science, vol.296, issue.5569, pp.916-919, 2002.
DOI : 10.1126/science.1068597

J. L. Rinn, G. Euskirchen, P. Bertone, R. Martone, N. M. Luscombe et al., The transcriptional activity of human Chromosome 22, Genes & Development, vol.17, issue.4, pp.529-540, 2003.
DOI : 10.1101/gad.1055203

D. Kampa, J. Cheng, P. Kapranov, M. Yamanaka, S. Brubaker et al., Novel RNAs Identified From an In-Depth Analysis of the Transcriptome of Human Chromosomes 21 and 22, Genome Research, vol.14, issue.3, pp.331-342, 2004.
DOI : 10.1101/gr.2094104

C. Girard-reydet, D. Gregoire, Y. Vassetzky, and M. Mechali, DNA replication initiates at domains overlapping with nuclear matrix attachment regions in the xenopus and mouse c-myc promoter, Gene, vol.332, issue.32, pp.129-138, 2004.
DOI : 10.1016/j.gene.2004.02.031

R. D. Little, T. H. Platt, and C. L. Schildkraut, Initiation and termination of DNA replication in human rRNA genes., Molecular and Cellular Biology, vol.13, issue.10, pp.6600-6613, 1993.
DOI : 10.1128/MCB.13.10.6600

J. A. Huberman and A. D. Riggs, On the mechanism of DNA replication in mammalian chromosomes, Journal of Molecular Biology, vol.32, issue.2, pp.327-341, 1968.
DOI : 10.1016/0022-2836(68)90013-2

Y. B. Yurov and N. A. Liapunova, The units of DNA replication in the mammalian chromosomes: Evidence for a large size of replication units, Chromosoma, vol.95, issue.3, pp.253-267, 1977.
DOI : 10.1007/BF00329774

R. Berezney, D. D. Dubey, and J. A. Huberman, Heterogeneity of eukaryotic replicons, replicon clusters, and replication foci, Chromosoma, vol.108, issue.8, pp.471-484, 2000.
DOI : 10.1007/s004120050399